REBEAN

Read Embedding Based Enzyme ANnotation

REBEAN is a DNA language Model for enzymatic annotation of shotgun metagenomic sequencing reads. REBEAN is built for discovery of enzymatic function in both known and unknown sequence space mitigating drawbacks of alignment and translation-based approaches. Read more.

Uploads

Please see the tutorial for detailed input specifications.
Add a file or drag it here.
  • up to files at the same time and per file
  • compressed upload possible
  • fasta/fastq format required
Note: Registered users can resume uploads within 3 hours.

Urls

Please see the tutorial for detailed input specifications.
  • if url does not directly reference a file, add filename manually using the format: <url>,<filename>
  • compressed archives or fasta/fastq format required
  • limit of 10 urls per submission
  • one SRA accession id per line
  • format: [SRR|ERR|DRR]xxxxxx
  • limit of 10 ids per submission
  • Quality control enabled per default (strongly recommended)
Note: Remote files have to be accessible without authentication.

Submission

Details of current submission.

Upload:
0%
Reference database for mi-faser
Options
Auto submit
submit once upload complete
Paired-end mode
submit paired-end files
Quality control
quality control for fastq files